PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g07430.1
Common NameLR48_Vigan08g213800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 176aa    MW: 19517.7 Da    PI: 7.7824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g07430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162573355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr+v+eIr p   g+++r++lg+f ++e+Aa+a++ a+  l+g
  Vang05g07430.1 25 FRGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFASPEMAARAYDSAAFFLKG 73
                    8****888.**********8...557**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-322487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-282482IPR001471AP2/ERF domain
PROSITE profilePS5103220.6662481IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-192482IPR016177DNA-binding domain
PRINTSPR003677.3E-112536IPR001471AP2/ERF domain
PfamPF008477.2E-102573IPR001471AP2/ERF domain
CDDcd000182.99E-272583No hitNo description
PRINTSPR003677.3E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSISEEEGKG GSRKRRREAE AETAFRGVRK RSWGRYVSEI RLPGQKTRIW LGSFASPEMA  60
ARAYDSAAFF LKGTSATLNF PDLVHSLPRP LSSSRRDIQS AAATAALHPP SLGTDTNSNS  120
SSWLDNLGDE SRISTMSFED VKDAPLMSPL RVDLTFGDFS WNNLFHFNYD DVFMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-152586668ATERF1
3gcc_A3e-152586668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11216RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521333.11e-110PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-33DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0L9V8B81e-126A0A0L9V8B8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SEW21e-126A0A0S3SEW2_PHAAN; Uncharacterized protein
STRINGGLYMA09G36840.22e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.19e-28ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]